{ "_id": "6a1ee37cb401979e73410ef9", "Type": "Package", "Package": "NACHO", "Title": "NanoString Quality Control Dashboard", "Version": "2.0.6.9000", "Authors@R": "c(person(given = \"Mickaël\",\nfamily = \"Canouil\",\nrole = c(\"aut\", \"cre\"),\nemail = \"pro@mickael.canouil.dev\",\ncomment = c(ORCID = \"0000-0002-3396-4549\")),\nperson(given = \"Roderick\",\nfamily = \"Slieker\",\nrole = \"aut\",\nemail = \"R.C.Slieker@lumc.nl\",\ncomment = c(ORCID = \"0000-0003-0961-9152\")),\nperson(given = \"Gerard\",\nfamily = \"Bouland\",\nrole = \"aut\",\nemail = \"G.A.Bouland@lumc.nl\"))", "Description": "NanoString nCounter data are gene expression assays where\nthere is no need for the use of enzymes or amplification\nprotocols and work with fluorescent barcodes (Geiss et al.\n(2018) ). Each barcode is assigned a\nmessenger-RNA/micro-RNA (mRNA/miRNA) which after bonding with\nits target can be counted. As a result each count of a specific\nbarcode represents the presence of its target mRNA/miRNA.\n'NACHO' (NAnoString quality Control dasHbOard) is able to\nanalyse the exported NanoString nCounter data and facilitates\nthe user in performing a quality control. 'NACHO' does this by\nvisualising quality control metrics, expression of control\ngenes, principal components and sample specific size factors in\nan interactive web application.", "License": "GPL-3", "URL": "https://github.com/mcanouil/NACHO/, https://m.canouil.dev/NACHO/", "BugReports": "https://github.com/mcanouil/NACHO/issues", "VignetteBuilder": "knitr", "Encoding": "UTF-8", "LazyData": "true", "Roxygen": "list(markdown = TRUE)", "RoxygenNote": "7.3.0", "SystemRequirements": "pandoc (>= 1.14), pandoc-citeproc", "Config/testthat/edition": "3", "Config/pak/sysreqs": "cmake libfontconfig1-dev libfreetype6-dev make\nlibuv1-dev zlib1g-dev", "Repository": "https://mcanouil.r-universe.dev", "Date/Publication": "2024-01-12 19:14:49 UTC", "RemoteUrl": "https://github.com/mcanouil/NACHO", "RemoteRef": "HEAD", "RemoteSha": "7c2b47df9c10e7d263101f20a81e017bbfefba1c", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-20 06:26:55 UTC", "User": "root" }, "Author": "Mickaël Canouil [aut, cre] (ORCID:\n),\nRoderick Slieker [aut] (ORCID: ),\nGerard Bouland [aut]", "Maintainer": "Mickaël Canouil ", "MD5sum": "51686e0db68433c79d65fe26b2bf44c2", "_user": "mcanouil", "_type": "src", "_file": "NACHO_2.0.6.9000.tar.gz", "_fileid": "1e0d4b2981bbd41f0857a638f06a51f90ce139b59aa023bec31f32aea3261fa0", "_filesize": 4322057, "_sha256": "1e0d4b2981bbd41f0857a638f06a51f90ce139b59aa023bec31f32aea3261fa0", "_created": "2026-05-20T06:26:55.000Z", "_published": "2026-06-02T14:06:52.802Z", "_distro": "noble", "_jobs": [ { "job": 79089827934, "time": 181, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7102811914" }, { "job": 79089828043, "time": 171, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7102809114" }, { "job": 79089827999, "time": 118, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "7102794820" }, { "job": 79089828543, "time": 149, "config": "macos-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7102802816" }, { "job": 79089826681, "time": 252, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7102764254" }, { "job": 79089826615, "time": 136, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7360026602" }, { "job": 79089827710, "time": 113, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "7102793666" }, { "job": 79089828495, "time": 126, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "7102797064" }, { "job": 79089828336, "time": 120, "config": "windows-release", "r": "4.6.0", "check": "OK", "artifact": "7102795514" } ], "_buildurl": "https://github.com/r-universe/mcanouil/actions/runs/26145283759", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/mcanouil/NACHO", "_commit": { "id": "7c2b47df9c10e7d263101f20a81e017bbfefba1c", "author": "Mickaël Canouil <8896044+mcanouil@users.noreply.github.com>", "committer": "Mickaël Canouil <8896044+mcanouil@users.noreply.github.com>", "message": "chore: usethis::use_dev_version(push = TRUE)\n", "time": 1705086889 }, "_maintainer": { "name": "Mickaël Canouil", "email": "pro@mickael.canouil.dev", "login": "mcanouil", "mastodon": "@MickaelCanouil@fosstodon.org", "bluesky": "@mickael.canouil.fr", "linkedin": "in/mickaelcanouil", "orcid": "0000-0002-3396-4549", "description": "Biostatistician, Ph. D. (& cinephile 🎬)\n@quarto-dev wizard 🧙‍♂️", "uuid": 8896044 }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.6.0", "role": "Depends" }, { "package": "utils", "role": "Imports" }, { "package": "data.table", "role": "Imports" }, { "package": "ggplot2", "version": ">= 3.3.0", "role": "Imports" }, { "package": "ggforce", "version": ">= 0.3.1", "role": "Imports" }, { "package": "ggrepel", "version": ">= 0.8.1", "role": "Imports" }, { "package": "knitr", "version": ">= 1.25", "role": "Imports" }, { "package": "rmarkdown", "version": ">= 1.16", "role": "Imports" }, { "package": "shiny", "version": ">= 1.4.0", "role": "Imports" }, { "package": "shinyWidgets", "version": ">= 0.4.9", "role": "Imports" }, { "package": "roxygen2", "version": ">= 7.2.0", "role": "Suggests" }, { "package": "testthat", "version": ">= 2.2.1", "role": "Suggests" }, { "package": "covr", "version": ">= 3.3.2", "role": "Suggests" }, { "package": "Biobase", "role": "Suggests" }, { "package": "GEOquery", "role": "Suggests" }, { "package": "limma", "role": "Suggests" } ], "_owner": "mcanouil", "_selfowned": true, "_usedby": 0, "_updates": [], "_tags": [], "_topics": [ "mirna", "mrna", "nanostring", "normalisation", "quality-control", "shiny" ], "_stars": 9, "_contributors": [ { "user": "mcanouil", "count": 721, "uuid": 8896044 }, { "user": "roderickslieker", "count": 8, "uuid": 20790977 } ], "_userbio": { "uuid": 8896044, "type": "user", "name": "Mickaël Canouil", "description": "Biostatistician, Ph. 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