Type: Package
Package: NACHO
Title: NanoString Quality Control Dashboard
Version: 2.0.6.9000
Authors@R: 
    c(person(given = "Mickaël",
             family = "Canouil",
             role = c("aut", "cre"),
             email = "pro@mickael.canouil.dev",
             comment = c(ORCID = "0000-0002-3396-4549")),
      person(given = "Roderick",
             family = "Slieker",
             role = "aut",
             email = "R.C.Slieker@lumc.nl",
             comment = c(ORCID = "0000-0003-0961-9152")),
      person(given = "Gerard",
             family = "Bouland",
             role = "aut",
             email = "G.A.Bouland@lumc.nl"))
Description: NanoString nCounter data are gene expression assays where
        there is no need for the use of enzymes or amplification
        protocols and work with fluorescent barcodes (Geiss et al.
        (2018) <doi:10.1038/nbt1385>). Each barcode is assigned a
        messenger-RNA/micro-RNA (mRNA/miRNA) which after bonding with
        its target can be counted. As a result each count of a specific
        barcode represents the presence of its target mRNA/miRNA.
        'NACHO' (NAnoString quality Control dasHbOard) is able to
        analyse the exported NanoString nCounter data and facilitates
        the user in performing a quality control. 'NACHO' does this by
        visualising quality control metrics, expression of control
        genes, principal components and sample specific size factors in
        an interactive web application.
License: GPL-3
URL: https://github.com/mcanouil/NACHO/, https://m.canouil.dev/NACHO/
BugReports: https://github.com/mcanouil/NACHO/issues
Depends: R (>= 3.6.0)
Imports: utils, data.table, ggplot2 (>= 3.3.0), ggforce (>= 0.3.1),
        ggrepel (>= 0.8.1), knitr (>= 1.25), rmarkdown (>= 1.16), shiny
        (>= 1.4.0), shinyWidgets (>= 0.4.9)
Suggests: roxygen2 (>= 7.2.0), testthat (>= 2.2.1), covr (>= 3.3.2),
        Biobase, GEOquery, limma
VignetteBuilder: knitr
Encoding: UTF-8
LazyData: true
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.0
SystemRequirements: pandoc (>= 1.14), pandoc-citeproc
Config/testthat/edition: 3
Config/pak/sysreqs: cmake libfontconfig1-dev libfreetype6-dev make
        libuv1-dev zlib1g-dev
Repository: https://mcanouil.r-universe.dev
Date/Publication: 2024-01-12 19:14:49 UTC
RemoteUrl: https://github.com/mcanouil/NACHO
RemoteRef: HEAD
RemoteSha: 7c2b47df9c10e7d263101f20a81e017bbfefba1c
NeedsCompilation: no
Packaged: 2026-06-19 10:55:02 UTC; root
Author: Mickaël Canouil [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-3396-4549>),
  Roderick Slieker [aut] (ORCID: <https://orcid.org/0000-0003-0961-9152>),
  Gerard Bouland [aut]
Maintainer: Mickaël Canouil <pro@mickael.canouil.dev>